SNP Profiles matching EQX J/5 [CHA]

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	AA	GG	TT	GG	CC	CG	AG	CT	AA	GG	TT	CC
1._RUQ_107	_	_	AA	GG	TT	_	CC	CG	AG	CT	_	_	TT	_
2._LCT_EEN_108	_	_	AA	GG	TT	_	CC	-	AG	CC	_	_	TT	_
3._LCT_EEN_68_/S-1	_	_	AC	GG	TT	_	CC	-	AG	CC	_	_	TT	_
4._LCT_EEN_85	_	_	AA	GG	TT	_	CC	-	-	CC	_	_	TT	_
5._LCT_EEN_108_/S	_	_	AA	GG	TT	_	CC	-	GG	CC	_	_	TT	_
6._LCT_EEN_162_/B	_	_	AA	GG	TT	_	CC	-	AA	CC	_	_	TT	_
7._LCT_EEN_201	_	_	CC	GG	TT	_	CC	-	AG	CT	_	_	AT	_
8._LCT_EEN_32	_	_	AA	GG	TT	_	CC	-	AG	CC	_	_	TT	_
9._LCT_EEN_218	_	_	AA	GG	TT	_	CC	-	GG	CC	_	_	TT	_
10._LCT_EEN_280	_	_	AC	GG	TT	_	CC	_	AG	CC	_	_	TT	_
11._LCT_EEN_221	_	_	AA	GG	TT	_	CC	-	GG	CC	_	_	TT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	GG	GG	CC	CC	CT	CC	GG	AG	TT	CC	CC
1._RUQ_107	GG	AA	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CC
2._LCT_EEN_108	GG	AA	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CC
3._LCT_EEN_68_/S-1	GG	AA	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CC
4._LCT_EEN_85	GG	AA	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CG
5._LCT_EEN_108_/S	GG	AC	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CC
6._LCT_EEN_162_/B	GG	AA	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CC
7._LCT_EEN_201	GG	AA	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CC
8._LCT_EEN_32	GG	AA	CC	GG	GG	CC	_	CT	_	TT	_	_	_	CC
9._LCT_EEN_218	GG	AA	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CC
10._LCT_EEN_280	GG	AA	CC	GG	GG	CC	_	CT	_	GG	_	_	_	CG
11._LCT_EEN_221	GG	AA	CC	GG	GG	CC	_	TT	_	GG	_	_	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	TT	CC	GG
1._RUQ_107	_	CT	AA	_	CC	_	_	_	GT	_	_	TT	CC	GG
2._LCT_EEN_108	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
3._LCT_EEN_68_/S-1	GG	TT	AA	_	CC	_	_	_	GT	_	_	TT	CC	GG
4._LCT_EEN_85	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
5._LCT_EEN_108_/S	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
6._LCT_EEN_162_/B	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
7._LCT_EEN_201	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
8._LCT_EEN_32	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
9._LCT_EEN_218	GG	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	-
10._LCT_EEN_280	_	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG
11._LCT_EEN_221	-	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	-

Input profile: EQX_/J_[CHA] RUQ_107

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EQX_/J_[CHA] RUQ_107

97.9 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LCT_EEN_108

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X16 Y3

Dapeng Zhang, 2014

3._LCT_EEN_68_/S-1

93.8 %
24 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D310 T3

Dapeng Zhang, 2014

4._LCT_EEN_85

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D254 T3

Dapeng Zhang, 2014

5._LCT_EEN_108_/S

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D336 T1

Dapeng Zhang, 2014

6._LCT_EEN_162_/B

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B C215 T3

Dapeng Zhang, 2014

7._LCT_EEN_201

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 176 T1

Dapeng Zhang, 2014

8._LCT_EEN_32

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

9._LCT_EEN_218

91.3 %
23 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

10._LCT_EEN_280

91.3 %
23 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A144 T1

Dapeng Zhang, 2016

11._LCT_EEN_221

90.9 %
22 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484